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Improving the Clinical Utility of DTC Genetic Tests

By Deborah Borfitz

October 29, 2018 | An estimated 100 million-plus people, roughly one-third of the U.S. population, will have had their DNA analyzed using an at-home genetic test kit by 2021. Up to 60% of the time, identified genetic variants are going to be proven correct with retesting in a medical-grade laboratory. For an investment starting at under $100, individuals can learn things that might save their life—or cause them to have unneeded treatments and surgeries—without a physician’s order for the test and often without follow-up of any kind by a healthcare professional.

There’s no use in physicians simply ignoring the soaring popularity of direct-to-consumer (DTC) genetic tests, says Emily Fine, a gynecologist in Hamden, Connecticut who is affiliated with Yale-New Haven Hospital. Ready or not, patients have started showing up at doctors’ offices with their 23andMe and Ancestry findings and possibly also beliefs about next steps from Dr. Google.

Fine believes that as DTC genetic tests become more popular and affordable, physicians ought to be proactively asking patients if they’ve had one done during routine exams—and then counseling them that it’s “only a first step” and to be sure they’re properly educated about what the results do and don’t mean, and the role of other factors (e.g., environmental and lifestyle) on disease risk. “A lot of my patients are already sharing that information with me,” says Fine.

“The problem with DTC genetic tests is that you can’t babysit ramifications of some of the information,” she adds. “I have a patient who found out she’s at risk for Alzheimer’s, and now she is profoundly depressed and every time she forgets where she put her keys she is ready to shoot herself.”

Fine’s preference is to understand patients’ pedigree or family history before ordering any clinically-indicated genetic test. But findings of DTC tests can sometimes also change her medical recommendations, she says. Recently, for example, a patient with a relatively weak family history of breast cancer discovered via 23andMe that she was of French-Canadian descent—an ethnic group that put her at heightened risk of several cancer-causing genetic mutations. That prompted Fine to refer the woman to have her entire cancer genome mapped.

The trouble is most physicians aren’t like Dr. Fine. They don’t understand genetics well enough to lead the conversation, if they have the time or even believe in the clinical utility of DTC consumer testing at all. “It is usually hard to get an appointment with a specialist based on 23andMe results,” notes genetic counselor Dawn Laney, director of the Emory Genetic Clinical Trials Center. Laney is also co-founder of ThinkGenetic, focused on educating bewildered patients and connecting them with personalized clinical genetic counseling and testing services.

23andMe findings are based on a SNP panel that offers an incomplete view of disease susceptibility, says Laney. To assess breast cancer risk, for example, 23andMe relies on three genetic markers in the DNA—including BRCA1 and BRCA2. Detected gene changes require follow-up in a diagnostic laboratory that specializes in breast cancer genes to determine if an individual’s lifetime risk is negligibly or profoundly higher than average. The opportunity for needless worry only multiplies when patients opt to receive all their raw uninterpreted genotype data from 23andMe and upload it to online portals such as Promethease for a personal DNA report.

Ellen Matloff, president & CEO of digital health company My Gene Counsel, says she was adamantly opposed to DTC testing just six years ago. But since then, 15 million people have had one done, and the number of DTC genetic companies has mushroomed. “I realized, especially as a genetic counselor, I was doing consumers a disservice with my attitude. What we needed to do was find a way to use information from these tests to create a bridge for patients to the medical world.” My Gene Counsel is endeavoring to do that by becoming a trusted source of unbiased, evidence-based information for patients and physicians.

Some of Fine’s patients, including those with genetic mutations of unknown significance or who are BRCA-negative but have a concerning family history of breast cancer, were among the first to register. Other early adopters are BRCA-positive patients anxious to know how they will be monitored and what risk-reduction measures they can take.

Knowledge Gaps

23andMe and Ancestry dominate the “entertainment testing” market, telling people everything from their origins to genetic traits like curly hair and caffeine sensitivity, says Laney. But 23andMe is also now FDA-approved to assess their customers for seven rare genetic conditions such as Gaucher disease and alpha-1 antitrypsin deficiency as well as genetic predispositions for additional conditions, including breast cancer, Alzheimer's, Parkinson's, and  celiac diseases. Helix has also moved in this direction with DNA testing kits for diabetes and inherited high cholesterol. “I consider these screening tests because they’re really designed to look for genetic conditions that are actionable,” Laney says. “They’re more designed to suggest the possibility of a problem, and then you’re supposed to get further testing done at a doctor’s office.”

A growing number of DTC companies have also expanded into carrier testing, with implications for people in their childbearing years. Anyone identified as a carrier for a condition by a DTC kit needs to have the finding verified in a more specific diagnostic setting and receive genetic counseling to learn how the gene change may increase the risk for problems in their children, Laney says. Some carrier panels may also reveal an existing genetic condition or increased risk for a health issue.

“It makes sense for patients to share those results with their physician, mostly just to start the conversation,” Laney says, although PCPs mostly still view 23andMe as more of a “delegated annoyance.” Physicians should be at least be aware of the various DTC genetic tests being marketed to their patients.

Genetics and clinical diagnostics are related and, in some respects, overlapping fields. One big difference is that genetics can sometimes find “previvors” who are genetically predisposed to a disease, but do not yet have it. The advantage of knowing a person’s genetic predispositions before any sort of symptoms emerge is that physicians can work with patients to reduce their risk of disease or at least catch it at an earlier, more treatable stage, says Matloff. The information would be useful to the medical practices of primary care physicians (PCPs), OB-GYNs, breast surgeons, oncologists, gastroenterologists, and cardiac specialists, among others.

Before founding My Gene Counsel, Matloff ran the Cancer Genetic Counseling Program at Yale School of Medicine for 18 years, and during her tenure the cost of medical-grade genetic testing plummeted and was recommended more widely. It was also more often ordered by healthcare providers without the help of a genetic counselor. “We started seeing a lot of mistakes happening, bad mistakes, people who had their breasts and ovaries removed and then later learned that they hadn’t needed to, and people with advanced cancer diagnoses who were told their test was normal when in fact it was not,” she says. At the same time, thousands of people began to have DTC genetic testing and had their raw data in hand.

“I realized we needed to do something different, something digital and scalable that would not replace in-person meetings with physicians or a genetic counselor but that would be available faster,” says Matloff. “It would be different from a WebMD search and tie specifically to a person’s test result by gene and variant, and then send out push notifications as the field and our information updates.”

Keeping Current

Anyone who has had BRCA1 or BRCA2 testing can log onto My Gene Counsel to learn about their gene and variant, and what they can do about the finding. Registered users of its recently launched patient portal can have their genetic test results paired with matching streams of information. For those who had testing done via a DTC kit, that would include how to get results confirmed at a medical-grade testing facility. In the next few months, all of the readily tested hereditary cancer and cardiac genes will be released, says Matloff.

Users also receive push notifications by text or email when any new evidence emerges about their particular genetic mutation. That’s important, says Matloff, because many people who have genetic testing done never return to a genetic counselor if they saw one in the first place. “Right now, there is absolutely no mechanism for patients to receive updates. They just have to hope that their healthcare provider remembers to update them the next time they go in for a visit… and that’s a tall order considering how many patients physicians are seeing and how little time they’re able to spend with each one.”

Come early 2019, My Gene Counsel will also be separately available as a portal for physicians, nurses, physician assistants and other healthcare providers, including genetic counselors, to look up specific gene mutations of their patients, says Matloff. Patients who are My Gene Counsel users can also enable their providers to receive the same relevant updates they do.

The new tool will require a lot less of providers’ time and be the better option from a malpractice point of view, says Matloff. Physicians would need hours, if not days, to exhaustively research some topics on their own, and they “simply don’t have the time and resources to [independently] stay on top of all of the updates.”

“Genetics is the most rapidly changing field in medicine, bar none,” agrees Fine, “so being able to tap into that database will be very helpful.” Over time, she imagines it could even guide clinical decision-making about when targeted interventions such as prophylactic surgery are justified.

Bridging the Divides

Consumers presented with concerning DTC genetic test results need guidance on next steps and may not know where to turn, says Laney. Most reports will instruct them to consider genetic counseling, but not how to find an affordable and available counselor.

Test results can also be hard to interpret, says Laney. Not long ago, a man who ran his raw data from 23andMe through Promethease came into Emory’s genetic clinic for a consult and testing only to learn his newly found genetic condition was a fluke, the result of a glitch in the software. “He had a variant alright, just not a disease-causing one,” she says. “If you’re a consumer that’s awfully confusing. All the terminology is hard enough for someone who has gone through medical school to understand.”

Part of ThinkGenetic’s mission, Laney says, is to translate complicated genetic information into plain language for the general population, so they enter the conversation with their PCP on a more level playing field—not simply barrage them with a long list of questions. “We’ve started with the conditions that are on carrier panels, have clinical trials, or are very common in the population, things where we know there are actionable next steps,” she says.

Admittedly, ThinkGenetic has a “long way to go in reaching out to PCPs, family practitioners, and neurologists/specialists,” says Laney. It has designed symptom-based, patient-specific summaries with actionable next steps to help with patient-doctor engagement so healthcare providers don’t get “blindsided” by patients who initiate a conversation about their risk for a specific genetic condition. But currently, the summaries cover only about 200 of 7,000 known genetic conditions.

ThinkGenetic’s “patient-focused diagnostic assistant” helps patients remember to mention critical signs and symptoms to their physician, says Laney, since some seemingly unrelated symptoms “could be key to knowing what’s going on with them.” An example would be people with Fabry disease, a rare genetic condition, where the important clues would include GI pain, a burning sensation in their hands and feet, and an inability to sweat normally.

For physicians, having a targeted ThinkGenetic summary that tells them the ways a genetic condition like Fabry disease can affect the whole body and the specialized treatment facilities where they can refer patients “sounds a lot better than ‘I don’t know’ or trying to bluff their way through it,” says Laney.  After a confirmed diagnosis of a genetic condition, ThinkGenetic’s summary content also provides healthcare providers and consumers with useful “tips and tricks” (e.g., a foot mister that cools the extremities, soothing neuropathic pain) beyond the targeted therapy.